Sonoff S31 Lite - Lost Connection?

No. All you do is factory reset the devices. Then put your Hubitat and each S31 Lite into zigbee pairing mode. They will pair back with their original device-ids and names.

All the symptoms you describe for device A and B occur when mesh networks are weak or interfered with. The association with a particular platform version is purely coincidental.

I would recommend taking @Ken_Fraleigh's advice in your original post about this issue. Or adding a few other well-behaved zigbee repeaters/routers.